PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016447278.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 142aa    MW: 16248 Da    PI: 4.8629
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016447278.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.75.4e-082468345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     +WT+ E + + +a + + ++   +W ++a++++ g+t  +++  + 
   XP_016447278.1 24 KWTPAENKAFENALAFFDKDtpdRWQRVAEMVP-GKTVVDVIRQYK 68
                     8********************************.******998886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.1E-92173IPR001005SANT/Myb domain
SuperFamilySSF466892.54E-122378IPR009057Homeodomain-like
CDDcd001677.34E-72470No hitNo description
PfamPF002498.2E-72469IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MEILSPAPYL SNSSWFLDEE KSTKWTPAEN KAFENALAFF DKDTPDRWQR VAEMVPGKTV  60
VDVIRQYKEL EDDVSRIEAG LITIPGYTTT SSSPFTLEWG NSHSSFDGYK QSYVVGGKRS  120
LSNRPPEQER KKGIPWTEEE HK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A6e-1725981184RADIALIS
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755181e-142HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009603384.11e-101PREDICTED: transcription factor DIVARICATA-like
RefseqXP_009603385.11e-101PREDICTED: transcription factor DIVARICATA-like
RefseqXP_016432478.11e-101PREDICTED: transcription factor DIVARICATA-like
RefseqXP_016447278.11e-102PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H72e-66DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLM1CZ985e-89M1CZ98_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000780291e-88(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45824140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.17e-58MYB family protein